The city of Tubas and al-Faraa refugee camp were also raided during the operation across the northern West Bank – the deadliest of its kind since the start of the war in Gaza last October triggered by Hamas’s attack on Israel.
Hundreds of troops from several branches of the security forces were involved, with civilians confined to their homes and utilities cut as the Israeli military battled with militants on the ground and with air strikes.
Residents of Jenin camp in the west of the city are emerging into the streets for the first time since the IDF began its assault on 27 August.
Many, stunned and exhausted, slowly assessed the damage – the new layers of destruction mapping this operation onto the camp.
Khalid abu Sabeer lives in a basement apartment next to the mosque. The entire floor of his home, he said, was blown out by a powerful explosion.
The Israeli army was interested in a cave beneath the building, he said, that had been there for decades, empty.
The IDF asked him to leave before blowing it up – and his home along with it.
Years of violent confrontation between the Israeli army and Palestinian armed groups have been etched into Jenin’s narrow pathways – bullet-holes scattered across walls, piles of rubble left by military bulldozers, graffiti in the shape of M16 rifles, along with the name “Hamas”.
Among the destruction is a hole in the middle of the city centre – the main road broken and impassable.
Construction vehicles dig whole tree trunks out of the shattered road and cart them away. Shop owners and photojournalists clamber over the rubble to inspect the damage.
On either side, a crowd has paused to watch the rebuilding – residents on foot, on scooters, on bicycles; out on the streets for the first time in more than nine days.
The head of Jenin’s government hospital, Dr Wissam Bakr, who is also there, says the first four days of the Israeli operation were the hardest for the hospital – with power and water supplies cut.
They were relying on generators and water tanks, he said, with two new-borns and two elderly patients on ventilators.
Further down the same road, the sounds of the city have returned: stallholders are back at the edge of the marketplace, hawking carts full of fresh fruit and vegetables; the cafes around packed with generations of men and boys.
On Friday morning, gunfire erupted again in the refugee camp, signalling the start of many funerals taking place. The BBC understands at least eight of the dead are civilians, including a 16-year-old girl.
In a statement, the IDF said that in the area of Jenin “14 terrorists have been eliminated, over 30 suspects have been apprehended, approximately 30 explosives planted under roads were dismantled” during the operation.
It said it had also dismantled what it called “numerous terror infrastructure sites… including an underground weapons storage facility located beneath a mosque, and a lab used to manufacture explosives” and had removed “large quantities of weapons”.
The Palestinian health ministry says three Palestinians have also been killed in the southern governorate of Hebron over the past nine days.
The Israeli military said one of them carried out a shooting attack that killed three Israeli police officers near Tarqumiyah on Sunday.
There has been a spike in violence in the West Bank since Hamas’s attack and the ensuing war in Gaza.
More than 600 Palestinians have been killed as Israeli forces have intensified their raids, the Palestinian health ministry says. Israel says it is trying to stem deadly Palestinian attacks on Israelis in the West Bank and Israel.
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